Variant report

Variant	rs11204732
Chromosome Location	chr1:150820870-150820871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150818986..150820930-chr1:150847610..150849442,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143437	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10305668	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10788793	1.00[AMR][1000 genomes]
rs10788796	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13376166	1.00[ASN][1000 genomes]
rs267727	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs267728	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28498299	1.00[ASN][1000 genomes]
rs4970975	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6587538	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6661777	1.00[ASN][1000 genomes]
rs7526690	1.00[AMR][1000 genomes]
rs7533914	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs796407	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
5	nsv872420	chr1:150786038-150847647	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1010875	chr1:150796816-150845827	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	esv1793983	chr1:150804748-150825924	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150793200-150823200	Strong transcription	Placenta	Placenta
2	chr1:150801800-150824600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:150805800-150824600	Weak transcription	HMEC	breast
4	chr1:150807400-150824600	Weak transcription	A549	lung
5	chr1:150807400-150847000	Weak transcription	Colonic Mucosa	Colon
6	chr1:150808000-150821600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:150808800-150847000	Weak transcription	Psoas Muscle	Psoas
8	chr1:150809000-150823000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:150809000-150824400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:150809000-150824600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:150809200-150824600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:150809200-150846800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:150809400-150821000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:150809400-150821000	Weak transcription	Thymus	Thymus
15	chr1:150809400-150823200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:150809600-150846000	Weak transcription	Pancreas	Pancrea
17	chr1:150810000-150824800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr1:150810200-150824600	Weak transcription	NHLF	lung
19	chr1:150810400-150846600	Weak transcription	Fetal Heart	heart
20	chr1:150812000-150824400	Weak transcription	Fetal Brain Male	brain
21	chr1:150812000-150831200	Weak transcription	Lung	lung
22	chr1:150812000-150847000	Weak transcription	Gastric	stomach
23	chr1:150812200-150821600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr1:150812200-150822200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:150812200-150824600	Weak transcription	HepG2	liver
26	chr1:150812200-150824600	Weak transcription	NHEK	skin
27	chr1:150812200-150828000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr1:150812200-150829800	Weak transcription	HUVEC	blood vessel
29	chr1:150812200-150834000	Weak transcription	Brain Angular Gyrus	brain
30	chr1:150812400-150821600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:150812400-150824400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:150812400-150824400	Weak transcription	Dnd41	blood
33	chr1:150812400-150824400	Weak transcription	GM12878-XiMat	blood
34	chr1:150812400-150824600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:150812400-150824600	Weak transcription	Brain Substantia Nigra	brain
36	chr1:150812400-150824600	Weak transcription	NH-A	brain
37	chr1:150812400-150830800	Weak transcription	Ovary	ovary
38	chr1:150812400-150840600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr1:150812400-150842000	Weak transcription	Esophagus	oesophagus
40	chr1:150812400-150846800	Weak transcription	Fetal Kidney	kidney
41	chr1:150812600-150821000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr1:150812600-150821600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:150812600-150822000	Weak transcription	Right Ventricle	heart
44	chr1:150812600-150824600	Weak transcription	Fetal Brain Female	brain
45	chr1:150812600-150824600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr1:150812600-150846000	Weak transcription	Small Intestine	intestine
47	chr1:150812600-150846800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr1:150813000-150821800	Weak transcription	Fetal Thymus	thymus
49	chr1:150813000-150822200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr1:150813000-150824600	Weak transcription	Primary hematopoietic stem cells	blood

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