Variant report

Variant	rs1033779
Chromosome Location	chr10:4163279-4163280
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3826233..3829471-chr10:4161588..4164936,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1033778	0.97[EUR][1000 genomes]
rs10508276	1.00[CHB][hapmap]
rs11592324	1.00[CHB][hapmap]
rs17132103	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4160600-4163400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:4160600-4163600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:4162600-4163600	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:4162600-4163600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:4162600-4164200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:4162800-4163400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:4162800-4163600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr10:4162800-4163600	Enhancers	Primary B cells from cord blood	blood
9	chr10:4162800-4163600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:4162800-4163600	Enhancers	GM12878-XiMat	blood
11	chr10:4162800-4164000	Enhancers	Fetal Muscle Trunk	muscle
12	chr10:4162800-4164000	Enhancers	Right Ventricle	heart
13	chr10:4162800-4164000	Enhancers	Stomach Smooth Muscle	stomach
14	chr10:4162800-4164200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:4162800-4164400	Enhancers	Primary hematopoietic stem cells	blood
16	chr10:4162800-4164400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:4162800-4164600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:4162800-4164600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr10:4162800-4164800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr10:4162800-4165400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:4162800-4165800	Enhancers	Fetal Lung	lung
22	chr10:4163000-4163400	Weak transcription	Fetal Heart	heart
23	chr10:4163000-4163400	Weak transcription	Fetal Thymus	thymus
24	chr10:4163000-4166800	Weak transcription	Pancreas	Pancrea
25	chr10:4163000-4173400	Weak transcription	NHLF	lung
26	chr10:4163200-4163400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:4163200-4163600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr10:4163200-4163600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:4163200-4163800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links