Variant report

Variant	rs1033845
Chromosome Location	chr14:24352312-24352313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10139869	0.81[ASN][1000 genomes]
rs10142428	0.81[ASN][1000 genomes]
rs11158391	0.81[ASN][1000 genomes]
rs11158422	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1957685	0.87[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.82[EUR][1000 genomes]
rs6573427	0.81[ASN][1000 genomes]
rs6573428	0.81[ASN][1000 genomes]
rs8010302	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8020506	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv901494	chr14:24243637-24386159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1033845	OXA1L	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24344600-24353000	Weak transcription	Ovary	ovary
2	chr14:24350600-24352400	Enhancers	Brain Germinal Matrix	brain
3	chr14:24351600-24352400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:24351800-24355200	Enhancers	Fetal Brain Male	brain
5	chr14:24352000-24352600	Enhancers	HepG2	liver
6	chr14:24352000-24353000	Enhancers	Fetal Brain Female	brain
7	chr14:24352000-24354000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:24352000-24355200	Enhancers	Fetal Intestine Small	intestine
9	chr14:24352200-24352800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:24352200-24353200	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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