Variant report

Variant	rs1035394
Chromosome Location	chr5:58013548-58013549
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1019469	0.81[JPT][hapmap]
rs158964	0.82[CEU][hapmap]
rs158968	0.82[JPT][hapmap]
rs158970	0.81[JPT][hapmap]
rs2591914	0.91[CEU][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs965795	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3342936	chr5:58013100-58013564	Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58012200-58014200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:58012400-58014000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:58012800-58015800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:58012800-58018800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:58013000-58014000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:58013000-58015000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:58013200-58013600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr5:58013200-58013600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr5:58013200-58013600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr5:58013200-58013600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr5:58013200-58013600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:58013200-58013800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:58013200-58013800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:58013400-58013600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr5:58013400-58014000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr5:58013400-58014200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr5:58013400-58014400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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