Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1019469	0.85[YRI][hapmap]
rs1035394	0.82[CEU][hapmap]
rs158965	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs158970	0.80[MEX][hapmap];0.84[YRI][hapmap]
rs158974	0.81[CHD][hapmap];0.82[JPT][hapmap];0.80[MEX][hapmap];0.84[YRI][hapmap]
rs158977	0.81[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs158979	0.81[ASN][1000 genomes]
rs158999	0.84[GIH][hapmap]
rs159002	0.84[GIH][hapmap]
rs159004	0.93[GIH][hapmap]
rs159007	0.93[GIH][hapmap]
rs169705	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs17346755	0.83[MEX][hapmap]
rs2545791	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2591914	0.91[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs292970	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs292971	0.81[JPT][hapmap];0.84[YRI][hapmap]
rs292981	0.83[ASN][1000 genomes]
rs292982	0.94[JPT][hapmap];0.84[YRI][hapmap];0.83[ASN][1000 genomes]
rs292983	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs292984	0.94[JPT][hapmap]
rs292985	0.81[CHD][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.83[ASN][1000 genomes]
rs292986	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs292987	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs377601	0.82[JPT][hapmap]
rs380850	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs393390	0.81[JPT][hapmap]
rs393400	0.82[JPT][hapmap]
rs413605	0.82[JPT][hapmap]
rs433188	0.82[JPT][hapmap];0.84[YRI][hapmap]
rs435514	0.82[JPT][hapmap]
rs441085	0.82[JPT][hapmap]
rs442414	0.82[JPT][hapmap];0.84[YRI][hapmap]
rs449867	0.82[JPT][hapmap]
rs965795	0.82[MKK][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs158964	C5orf43	cis	parietal	SCAN
rs158964	KIF2A	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57933600-57944000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:57934600-57935000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:57934600-57936200	Enhancers	Brain Germinal Matrix	brain

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