Variant report

Variant	rs159004
Chromosome Location	chr5:57961405-57961406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1035393	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12054892	0.87[LWK][hapmap];0.86[YRI][hapmap]
rs12653046	0.89[LWK][hapmap];0.80[YRI][hapmap]
rs13354637	0.86[YRI][hapmap]
rs1422226	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs149351	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs149525	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs158955	0.81[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap]
rs158957	0.81[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap]
rs158958	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs158964	0.93[GIH][hapmap]
rs158980	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[MKK][hapmap];0.82[TSI][hapmap];0.83[YRI][hapmap]
rs158987	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs158990	0.85[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs158993	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs158997	0.84[ASN][1000 genomes]
rs158999	0.88[CEU][hapmap];0.90[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs159000	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs159002	0.88[CEU][hapmap];0.90[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap]
rs159003	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs159006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159007	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159008	0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs172397	0.82[EUR][1000 genomes]
rs172398	0.82[EUR][1000 genomes]
rs176637	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs176807	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs182391	0.91[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes]
rs186010	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1895232	0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2032814	0.82[JPT][hapmap]
rs2032815	0.80[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs2161246	0.85[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs2545789	0.91[CEU][hapmap];0.85[CHB][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs2591920	0.81[EUR][1000 genomes]
rs2591922	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2591924	0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap]
rs290572	0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs292948	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs292949	0.91[CEU][hapmap];0.85[CHB][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs293000	0.82[EUR][1000 genomes]
rs293002	0.91[CEU][hapmap];0.85[CHB][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs293005	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs293006	0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs293007	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs293008	0.90[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293009	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs293010	0.91[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes]
rs293013	0.91[CEU][hapmap];0.85[CHB][hapmap];0.82[EUR][1000 genomes]
rs293014	0.82[EUR][1000 genomes]
rs293018	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs293019	0.91[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs293023	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs293025	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs293026	0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs293027	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs293029	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs49961	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs63710	0.81[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs9292170	0.82[JPT][hapmap];0.87[LWK][hapmap];0.83[MKK][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv4845	chr5:57949493-57994156	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv437464	chr5:57954311-57961405	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv437465	chr5:57954311-57961405	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1815069	chr5:57956072-57961405	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57960600-57961800	Enhancers	Stomach Mucosa	stomach

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