Variant report

Variant	rs159008
Chromosome Location	chr5:57962260-57962261
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1035393	0.81[ASN][1000 genomes]
rs1422226	0.81[ASN][1000 genomes]
rs149351	0.83[ASN][1000 genomes]
rs149525	0.83[ASN][1000 genomes]
rs158955	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs158957	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs158958	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs158980	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs158987	0.82[ASN][1000 genomes]
rs158990	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs158993	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs158997	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs158999	0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs159000	0.86[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs159002	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs159003	0.93[ASN][1000 genomes]
rs159004	0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs159006	0.93[ASN][1000 genomes]
rs159007	0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs176637	0.83[ASN][1000 genomes]
rs176807	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs182391	0.80[CHB][hapmap]
rs186010	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1895232	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs2032815	0.83[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2161246	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2591922	0.81[ASN][1000 genomes]
rs2591924	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs290572	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs293005	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs293006	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs293007	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs293008	0.80[ASN][1000 genomes]
rs293010	0.80[CHB][hapmap]
rs293013	0.80[CHB][hapmap]
rs293018	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs293019	0.81[ASN][1000 genomes]
rs293023	0.89[ASN][1000 genomes]
rs293025	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs293026	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs293027	0.81[ASN][1000 genomes]
rs293029	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs49961	0.81[ASN][1000 genomes]
rs63710	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv4845	chr5:57949493-57994156	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57961800-57963000	Weak transcription	Stomach Mucosa	stomach
2	chr5:57961800-57967400	Enhancers	HUVEC	blood vessel
3	chr5:57962200-57962600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:57962200-57963200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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