Variant report

Variant	rs159003
Chromosome Location	chr5:57959975-57959976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1035393	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1422226	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs149351	0.88[ASN][1000 genomes]
rs149525	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs158987	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs158990	0.89[ASN][1000 genomes]
rs158997	0.84[ASN][1000 genomes]
rs158999	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs159000	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs159004	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs159006	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs159007	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs159008	0.93[ASN][1000 genomes]
rs172397	0.81[EUR][1000 genomes]
rs172398	0.81[EUR][1000 genomes]
rs176637	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs176807	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs182391	0.80[EUR][1000 genomes]
rs186010	0.88[ASN][1000 genomes]
rs1895232	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2032815	0.89[ASN][1000 genomes]
rs2161246	0.89[ASN][1000 genomes]
rs2545789	0.80[EUR][1000 genomes]
rs2591920	0.80[EUR][1000 genomes]
rs2591922	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs290572	0.87[ASN][1000 genomes]
rs292949	0.80[EUR][1000 genomes]
rs293000	0.81[EUR][1000 genomes]
rs293002	0.81[EUR][1000 genomes]
rs293005	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293006	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293007	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293008	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs293010	0.82[EUR][1000 genomes]
rs293013	0.81[EUR][1000 genomes]
rs293014	0.81[EUR][1000 genomes]
rs293018	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293019	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293023	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs293025	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293026	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293027	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293029	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs49961	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs63710	0.90[ASN][1000 genomes]
rs9292170	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv4845	chr5:57949493-57994156	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv437464	chr5:57954311-57961405	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv437465	chr5:57954311-57961405	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv965588	chr5:57954339-57961148	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3469257	chr5:57954495-57960793	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3515411	chr5:57954645-57960643	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3515410	chr5:57955107-57960290	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3515407	chr5:57955145-57960543	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1815069	chr5:57956072-57961405	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2763882	chr5:57956826-57960198	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57957800-57961000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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