Variant report

Variant	rs186010
Chromosome Location	chr5:57997609-57997610
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1035393	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12653046	0.89[YRI][hapmap]
rs1422226	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs149351	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149525	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158955	0.81[JPT][hapmap]
rs158957	0.81[JPT][hapmap]
rs158958	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs158980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs158987	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs158990	0.95[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs158993	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs158997	0.83[ASN][1000 genomes]
rs158999	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs159000	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs159002	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs159003	0.88[ASN][1000 genomes]
rs159004	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs159006	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs159007	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs159008	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs172397	0.86[EUR][1000 genomes]
rs172398	0.86[EUR][1000 genomes]
rs176637	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs176807	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs182391	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs1895232	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2032814	0.86[JPT][hapmap]
rs2032815	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2161246	0.95[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs2545789	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs2591920	0.86[EUR][1000 genomes]
rs2591922	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2591924	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs290572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs292948	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs292949	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs293000	0.86[EUR][1000 genomes]
rs293002	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs293005	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs293006	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs293007	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs293008	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs293009	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293010	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs293013	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs293014	0.87[EUR][1000 genomes]
rs293018	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs293019	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs293023	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs293025	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs293026	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs293027	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs293029	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs49961	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs63710	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs6898044	0.89[YRI][hapmap]
rs9292170	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57995800-57999200	Weak transcription	Liver	Liver
2	chr5:57995800-58002800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:57997400-57997800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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