Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12054892	1.00[LWK][hapmap];0.86[MKK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs12653046	0.89[LWK][hapmap]
rs13354637	0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs158958	0.82[JPT][hapmap]
rs158980	0.86[JPT][hapmap];0.82[LWK][hapmap]
rs158993	0.81[JPT][hapmap]
rs158999	0.86[JPT][hapmap]
rs159000	0.86[JPT][hapmap]
rs159002	0.86[JPT][hapmap]
rs159003	0.84[AFR][1000 genomes]
rs159004	0.82[JPT][hapmap];0.87[LWK][hapmap];0.83[MKK][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs159006	0.83[AFR][1000 genomes]
rs159007	0.82[JPT][hapmap];0.87[LWK][hapmap];0.83[MKK][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs176807	0.81[JPT][hapmap]
rs186010	0.85[JPT][hapmap]
rs2032814	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2032815	0.82[JPT][hapmap]
rs2409576	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2591924	0.86[JPT][hapmap]
rs290572	0.86[JPT][hapmap]
rs293005	0.81[JPT][hapmap]
rs293007	0.81[JPT][hapmap]
rs293009	0.81[JPT][hapmap]
rs293018	0.81[JPT][hapmap]
rs293025	0.81[JPT][hapmap]
rs293026	0.80[JPT][hapmap]
rs293029	0.81[JPT][hapmap]
rs6898044	0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs965795	0.93[GIH][hapmap]
rs9790998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020937	chr5:57938969-57959918	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9292170	CDC20B	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57947200-57948600	Weak transcription	Fetal Lung	lung

Quick Search: