Variant report

Variant	rs2032815
Chromosome Location	chr5:57948730-57948731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs149351	0.81[ASN][1000 genomes]
rs149525	0.81[ASN][1000 genomes]
rs158955	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.90[YRI][hapmap]
rs158957	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.80[MKK][hapmap];0.92[TSI][hapmap];0.80[YRI][hapmap]
rs158958	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs158970	0.90[GIH][hapmap]
rs158974	0.88[GIH][hapmap]
rs158977	0.88[GIH][hapmap]
rs158980	0.86[JPT][hapmap]
rs158990	0.94[CEU][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs158993	0.88[JPT][hapmap]
rs158997	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs158999	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs159000	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs159002	0.86[JPT][hapmap]
rs159003	0.89[ASN][1000 genomes]
rs159004	0.80[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs159006	0.90[ASN][1000 genomes]
rs159007	0.80[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs159008	0.83[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs169705	0.88[GIH][hapmap]
rs176637	0.81[ASN][1000 genomes]
rs176807	0.82[JPT][hapmap]
rs186010	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1895232	0.81[JPT][hapmap]
rs2032814	0.82[JPT][hapmap]
rs2161246	0.94[CEU][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2591924	0.86[JPT][hapmap]
rs290572	0.86[JPT][hapmap]
rs292984	0.88[GIH][hapmap]
rs292985	0.88[GIH][hapmap]
rs293005	0.82[JPT][hapmap]
rs293006	0.81[JPT][hapmap]
rs293007	0.82[JPT][hapmap]
rs293008	0.80[JPT][hapmap]
rs293009	0.82[JPT][hapmap]
rs293018	0.82[JPT][hapmap]
rs293023	0.87[ASN][1000 genomes]
rs293025	0.82[JPT][hapmap]
rs293026	0.81[JPT][hapmap]
rs293029	0.82[JPT][hapmap]
rs380850	0.88[GIH][hapmap]
rs63710	0.91[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9292170	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020937	chr5:57938969-57959918	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57948600-57948800	Enhancers	Fetal Lung	lung

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