Variant report
| Variant | rs158997 |
|---|---|
| Chromosome Location | chr5:57978405-57978406 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs1035393 | 0.81[ASN][1000 genomes] |
| rs1422226 | 0.81[ASN][1000 genomes] |
| rs149351 | 0.83[ASN][1000 genomes] |
| rs149525 | 0.83[ASN][1000 genomes] |
| rs158987 | 0.81[ASN][1000 genomes] |
| rs158990 | 0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs158999 | 0.87[ASN][1000 genomes] |
| rs159000 | 0.87[ASN][1000 genomes] |
| rs159003 | 0.84[ASN][1000 genomes] |
| rs159004 | 0.84[ASN][1000 genomes] |
| rs159006 | 0.84[ASN][1000 genomes] |
| rs159007 | 0.84[ASN][1000 genomes] |
| rs159008 | 0.86[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs176637 | 0.83[ASN][1000 genomes] |
| rs176807 | 0.81[ASN][1000 genomes] |
| rs186010 | 0.83[ASN][1000 genomes] |
| rs1895232 | 0.81[ASN][1000 genomes] |
| rs2032815 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2161246 | 0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2591922 | 0.81[ASN][1000 genomes] |
| rs290572 | 0.81[ASN][1000 genomes] |
| rs293005 | 0.81[ASN][1000 genomes] |
| rs293006 | 0.81[ASN][1000 genomes] |
| rs293007 | 0.81[ASN][1000 genomes] |
| rs293018 | 0.81[ASN][1000 genomes] |
| rs293019 | 0.81[ASN][1000 genomes] |
| rs293023 | 0.88[ASN][1000 genomes] |
| rs293025 | 0.81[ASN][1000 genomes] |
| rs293026 | 0.81[ASN][1000 genomes] |
| rs293027 | 0.81[ASN][1000 genomes] |
| rs293029 | 0.81[ASN][1000 genomes] |
| rs49961 | 0.81[ASN][1000 genomes] |
| rs63710 | 0.83[AMR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2830363 | chr5:57893949-58555491 | Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029145 | chr5:57905821-58141221 | Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv830311 | chr5:57912546-58105636 | Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv4845 | chr5:57949493-57994156 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:57978400-57978800 | Weak transcription | HUVEC | blood vessel |
| 2 | chr5:57978400-57982600 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
