Variant report

Variant	rs293023
Chromosome Location	chr5:57972054-57972055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1035393	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1422226	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs149351	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs149525	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs158987	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs158990	0.93[ASN][1000 genomes]
rs158997	0.88[ASN][1000 genomes]
rs158999	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs159000	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs159003	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs159004	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs159006	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs159007	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs159008	0.89[ASN][1000 genomes]
rs176637	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs176807	0.92[ASN][1000 genomes]
rs186010	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1895232	0.92[ASN][1000 genomes]
rs2032815	0.87[ASN][1000 genomes]
rs2161246	0.93[ASN][1000 genomes]
rs2591922	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs290572	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs293005	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs293006	0.92[ASN][1000 genomes]
rs293007	0.92[ASN][1000 genomes]
rs293008	0.90[ASN][1000 genomes]
rs293009	0.84[ASN][1000 genomes]
rs293018	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs293019	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs293025	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs293026	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs293027	0.92[ASN][1000 genomes]
rs293029	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs49961	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs63710	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv4845	chr5:57949493-57994156	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57967400-57973600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:57967400-57977800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:57971800-57978400	Enhancers	HUVEC	blood vessel
4	chr5:57972000-57972800	Weak transcription	Spleen	Spleen

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