Variant report

Variant	rs1036082
Chromosome Location	chr8:8882184-8882185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:8873907..8877820-chr8:8877960..8882381,6	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10091588	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774244	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775788	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779660	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779804	1.00[ASN][1000 genomes]
rs11780338	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11780774	1.00[ASN][1000 genomes]
rs11781203	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784750	1.00[ASN][1000 genomes]
rs13250781	1.00[ASN][1000 genomes]
rs13277114	1.00[ASN][1000 genomes]
rs1530484	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17646197	1.00[ASN][1000 genomes]
rs17700611	1.00[ASN][1000 genomes]
rs17701980	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28510464	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28520356	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28572014	1.00[ASN][1000 genomes]
rs34293316	1.00[ASN][1000 genomes]
rs4840376	1.00[ASN][1000 genomes]
rs4840391	1.00[ASN][1000 genomes]
rs55824072	1.00[ASN][1000 genomes]
rs56109025	1.00[ASN][1000 genomes]
rs56349323	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56400435	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57280925	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59041878	1.00[ASN][1000 genomes]
rs59257214	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60551984	1.00[ASN][1000 genomes]
rs61397430	1.00[ASN][1000 genomes]
rs61730232	1.00[ASN][1000 genomes]
rs62492947	1.00[ASN][1000 genomes]
rs62493174	1.00[ASN][1000 genomes]
rs62495491	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62495539	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981610	1.00[ASN][1000 genomes]
rs6981745	1.00[ASN][1000 genomes]
rs6982619	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987569	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996374	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998594	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7001187	1.00[ASN][1000 genomes]
rs73518330	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73518392	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7357482	1.00[ASN][1000 genomes]
rs73662247	1.00[ASN][1000 genomes]
rs7822129	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826478	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828944	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830266	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843024	1.00[ASN][1000 genomes]
rs7843154	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843369	1.00[ASN][1000 genomes]
rs7843789	1.00[ASN][1000 genomes]
rs7846007	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895253	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9329175	1.00[ASN][1000 genomes]
rs9329176	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9987276	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv610205	chr8:8799111-8891644	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	n/a
5	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1036082	THEX1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8861200-8892400	Weak transcription	Aorta	Aorta
2	chr8:8861400-8907000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:8861600-8885600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:8861800-8883400	Weak transcription	Spleen	Spleen
5	chr8:8861800-8883600	Weak transcription	Small Intestine	intestine
6	chr8:8861800-8885200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr8:8861800-8887200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:8861800-8887400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr8:8861800-8890000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:8861800-8891400	Weak transcription	Brain Angular Gyrus	brain
11	chr8:8861800-8891800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr8:8861800-8892000	Weak transcription	Brain Anterior Caudate	brain
13	chr8:8861800-8892200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:8861800-8892200	Weak transcription	Ovary	ovary
15	chr8:8861800-8893800	Weak transcription	Fetal Brain Male	brain
16	chr8:8861800-8897800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:8861800-8915600	Weak transcription	Pancreas	Pancrea
18	chr8:8865400-8886000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:8870200-8883600	Weak transcription	Stomach Mucosa	stomach
20	chr8:8870600-8892200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:8871200-8900000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr8:8871400-8892800	Weak transcription	HSMMtube	muscle
23	chr8:8871800-8887200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr8:8871800-8894400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr8:8872000-8891200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr8:8872400-8887200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr8:8873200-8882200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr8:8873600-8882200	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:8873800-8884400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr8:8875000-8891200	Weak transcription	Fetal Intestine Small	intestine
31	chr8:8875200-8883600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:8875200-8887200	Weak transcription	Brain Substantia Nigra	brain
33	chr8:8875200-8897200	Weak transcription	Gastric	stomach
34	chr8:8875400-8884400	Weak transcription	Brain Hippocampus Middle	brain
35	chr8:8875400-8890200	Weak transcription	Fetal Stomach	stomach
36	chr8:8875400-8892600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr8:8875400-8894400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr8:8875400-8897000	Weak transcription	Lung	lung
39	chr8:8875400-8901200	Weak transcription	Thymus	Thymus
40	chr8:8875600-8882600	Weak transcription	Psoas Muscle	Psoas
41	chr8:8875600-8886000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr8:8875600-8890000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr8:8875600-8890200	Weak transcription	HSMM	muscle
44	chr8:8875800-8882800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr8:8875800-8892200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr8:8876400-8882800	Weak transcription	Left Ventricle	heart
47	chr8:8876400-8887200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr8:8876400-8890000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr8:8876400-8898000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr8:8876800-8883600	Weak transcription	NHLF	lung

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