Variant report

Variant	rs60551984
Chromosome Location	chr8:8920129-8920130
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10091588	1.00[ASN][1000 genomes]
rs1036082	1.00[ASN][1000 genomes]
rs11774244	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775788	1.00[ASN][1000 genomes]
rs11775993	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11779660	1.00[ASN][1000 genomes]
rs11779804	1.00[ASN][1000 genomes]
rs11780338	1.00[ASN][1000 genomes]
rs11780774	1.00[ASN][1000 genomes]
rs11781203	1.00[ASN][1000 genomes]
rs11782835	0.90[EUR][1000 genomes]
rs11784750	1.00[ASN][1000 genomes]
rs13250781	1.00[ASN][1000 genomes]
rs13263364	1.00[ASN][1000 genomes]
rs13277114	1.00[ASN][1000 genomes]
rs1530484	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155334	1.00[ASN][1000 genomes]
rs17155367	1.00[ASN][1000 genomes]
rs17646197	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17700611	1.00[ASN][1000 genomes]
rs17701980	1.00[ASN][1000 genomes]
rs2170335	1.00[ASN][1000 genomes]
rs28520356	1.00[ASN][1000 genomes]
rs28572014	1.00[ASN][1000 genomes]
rs2929466	1.00[ASN][1000 genomes]
rs34293316	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4840376	1.00[ASN][1000 genomes]
rs4840391	1.00[ASN][1000 genomes]
rs55824072	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56109025	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56349323	1.00[ASN][1000 genomes]
rs56400435	1.00[ASN][1000 genomes]
rs57280925	1.00[ASN][1000 genomes]
rs58802611	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59041878	1.00[ASN][1000 genomes]
rs59257214	1.00[ASN][1000 genomes]
rs61397430	1.00[ASN][1000 genomes]
rs61730232	1.00[ASN][1000 genomes]
rs62492947	1.00[ASN][1000 genomes]
rs62493173	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62493174	1.00[ASN][1000 genomes]
rs62495491	1.00[ASN][1000 genomes]
rs62495539	1.00[ASN][1000 genomes]
rs6601292	1.00[ASN][1000 genomes]
rs6981610	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981745	1.00[ASN][1000 genomes]
rs6982619	1.00[ASN][1000 genomes]
rs6987569	1.00[ASN][1000 genomes]
rs6996374	1.00[ASN][1000 genomes]
rs7001187	1.00[ASN][1000 genomes]
rs73518330	1.00[ASN][1000 genomes]
rs73518392	1.00[ASN][1000 genomes]
rs7357482	1.00[ASN][1000 genomes]
rs73662247	1.00[ASN][1000 genomes]
rs7822129	1.00[ASN][1000 genomes]
rs7826478	1.00[ASN][1000 genomes]
rs7828944	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830266	1.00[ASN][1000 genomes]
rs7843024	1.00[ASN][1000 genomes]
rs7843154	1.00[ASN][1000 genomes]
rs7843369	1.00[ASN][1000 genomes]
rs7843789	1.00[ASN][1000 genomes]
rs7846007	1.00[ASN][1000 genomes]
rs895253	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9329175	1.00[ASN][1000 genomes]
rs9329176	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs60551984	THEX1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8915000-8923600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr8:8915400-8928000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:8916000-8923200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:8916000-8923400	Weak transcription	Osteobl	bone
5	chr8:8916000-8935200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:8916200-8921600	Weak transcription	K562	blood
7	chr8:8916200-8923400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:8916600-8923400	Weak transcription	Fetal Heart	heart
9	chr8:8917200-8921600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:8918400-8921400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:8918800-8923600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:8919200-8922800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr8:8919200-8923400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:8919800-8920200	Weak transcription	Fetal Intestine Small	intestine
15	chr8:8920000-8920400	Enhancers	Stomach Mucosa	stomach
16	chr8:8920000-8922400	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links