Variant report

Variant	rs1036286
Chromosome Location	chr3:89543677-89543678
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1054750	0.82[ASN][1000 genomes]
rs1080592	0.86[ASN][1000 genomes]
rs1157607	0.82[ASN][1000 genomes]
rs1157608	0.82[ASN][1000 genomes]
rs12629165	0.89[ASN][1000 genomes]
rs12629758	0.86[ASN][1000 genomes]
rs12631313	0.82[ASN][1000 genomes]
rs12633325	0.86[ASN][1000 genomes]
rs12634269	0.86[ASN][1000 genomes]
rs12634341	0.89[ASN][1000 genomes]
rs12636710	0.82[ASN][1000 genomes]
rs1499780	0.82[ASN][1000 genomes]
rs1512183	0.82[ASN][1000 genomes]
rs17026944	0.82[ASN][1000 genomes]
rs17026990	0.86[ASN][1000 genomes]
rs17801380	0.82[ASN][1000 genomes]
rs1912965	0.82[ASN][1000 genomes]
rs1912966	0.82[ASN][1000 genomes]
rs2048518	0.93[ASN][1000 genomes]
rs2048519	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2048520	0.93[ASN][1000 genomes]
rs2048521	0.93[ASN][1000 genomes]
rs2117138	0.89[ASN][1000 genomes]
rs2346840	0.89[ASN][1000 genomes]
rs3762717	0.82[ASN][1000 genomes]
rs6795074	0.82[ASN][1000 genomes]
rs6800436	0.82[ASN][1000 genomes]
rs73139105	0.82[ASN][1000 genomes]
rs73139110	0.82[ASN][1000 genomes]
rs73139115	0.82[ASN][1000 genomes]
rs73139117	0.82[ASN][1000 genomes]
rs73139118	0.82[ASN][1000 genomes]
rs73139119	0.82[ASN][1000 genomes]
rs73139121	0.82[ASN][1000 genomes]
rs73139125	0.82[ASN][1000 genomes]
rs73139127	0.82[ASN][1000 genomes]
rs73139129	0.82[ASN][1000 genomes]
rs73139131	0.82[ASN][1000 genomes]
rs73139133	0.82[ASN][1000 genomes]
rs73139134	0.82[ASN][1000 genomes]
rs73139135	0.82[ASN][1000 genomes]
rs73139139	0.82[ASN][1000 genomes]
rs73139144	0.82[ASN][1000 genomes]
rs73139147	0.82[ASN][1000 genomes]
rs73139148	0.89[ASN][1000 genomes]
rs73139281	0.82[ASN][1000 genomes]
rs73139286	0.82[ASN][1000 genomes]
rs73139288	0.82[ASN][1000 genomes]
rs73139296	0.82[ASN][1000 genomes]
rs73139302	0.82[ASN][1000 genomes]
rs73141104	0.82[ASN][1000 genomes]
rs73141108	0.82[ASN][1000 genomes]
rs73141113	0.82[ASN][1000 genomes]
rs73144998	0.93[ASN][1000 genomes]
rs73146907	0.93[ASN][1000 genomes]
rs73146968	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs73146970	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs73146972	0.86[ASN][1000 genomes]
rs73149109	0.86[ASN][1000 genomes]
rs73149113	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7626735	0.82[ASN][1000 genomes]
rs7650466	0.82[ASN][1000 genomes]
rs972030	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1010932	chr3:89424428-90192503	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1001926	chr3:89482918-89544929	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536640	chr3:89482918-89544929	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv590952	chr3:89493167-89727198	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1010021	chr3:89521983-90141988	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv527704	chr3:89534377-89543677	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv441833	chr3:89536456-89547017	Enhancers	n/a	n/a	inside rSNPs	diseases
10	nsv524781	chr3:89543677-89597679	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89543000-89543800	Enhancers	Fetal Lung	lung

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