Variant report

Variant	rs1036329
Chromosome Location	chr9:8774135-8774136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10116829	1.00[ASN][1000 genomes]
rs10815942	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10815943	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10815944	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10977282	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10977287	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10977288	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10977289	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10977295	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10977296	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10977298	1.00[ASN][1000 genomes]
rs12337561	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12343337	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12350351	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1549998	0.85[ASN][1000 genomes]
rs17576912	0.85[ASN][1000 genomes]
rs17660536	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17660571	0.90[ASN][1000 genomes]
rs2033554	0.83[EUR][1000 genomes]
rs4606116	1.00[ASN][1000 genomes]
rs62528802	0.81[EUR][1000 genomes]
rs62528803	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62528804	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62528805	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62528806	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62528808	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62528809	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62528810	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528832	1.00[ASN][1000 genomes]
rs62528833	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62528834	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62528835	0.85[ASN][1000 genomes]
rs62528836	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62528837	0.85[ASN][1000 genomes]
rs62528838	0.85[ASN][1000 genomes]
rs9299074	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv892237	chr9:8752743-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv892238	chr9:8757828-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
9	nsv892239	chr9:8773599-8805462	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8752200-8776600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:8761600-8777600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:8762600-8779000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:8762800-8778600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:8763200-8778000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:8763200-8780600	Weak transcription	Fetal Kidney	kidney
7	chr9:8764800-8783600	Weak transcription	Fetal Stomach	stomach
8	chr9:8767600-8778400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:8769600-8779600	Weak transcription	Fetal Lung	lung
10	chr9:8773000-8774200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:8773000-8774200	Enhancers	Brain Cingulate Gyrus	brain
12	chr9:8773000-8774200	Enhancers	Brain Substantia Nigra	brain
13	chr9:8773600-8777800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:8773600-8778400	Weak transcription	Brain Anterior Caudate	brain
15	chr9:8773800-8777600	Weak transcription	Brain Hippocampus Middle	brain
16	chr9:8774000-8779600	Weak transcription	Brain Angular Gyrus	brain

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