Variant report

Variant	rs10977287
Chromosome Location	chr9:8763836-8763837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10116829	0.92[CEU][hapmap];0.85[ASN][1000 genomes]
rs1036329	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10815943	0.82[CEU][hapmap]
rs10815944	0.92[CEU][hapmap];0.87[CHD][hapmap];0.93[MEX][hapmap]
rs10977282	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10977288	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10977289	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10977295	0.90[CEU][hapmap];0.85[ASN][1000 genomes]
rs10977296	0.92[CEU][hapmap];0.85[ASN][1000 genomes]
rs10977298	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[ASN][1000 genomes]
rs12337561	0.81[EUR][1000 genomes]
rs12343337	0.92[CEU][hapmap]
rs12350351	0.92[CEU][hapmap]
rs17660536	0.92[CEU][hapmap]
rs17660571	0.83[CEU][hapmap]
rs2033554	0.83[EUR][1000 genomes]
rs4606116	0.92[CEU][hapmap];0.85[ASN][1000 genomes]
rs62528802	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62528803	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528804	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528805	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528806	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62528808	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62528809	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62528810	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62528832	0.85[ASN][1000 genomes]
rs62528833	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62528834	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9299074	0.92[CEU][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv892237	chr9:8752743-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv892238	chr9:8757828-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8751200-8764400	Weak transcription	Fetal Stomach	stomach
2	chr9:8752200-8776600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:8752800-8769400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:8758200-8764000	Weak transcription	Fetal Brain Male	brain
5	chr9:8758600-8773200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:8760800-8767000	Weak transcription	Fetal Heart	heart
7	chr9:8760800-8769200	Weak transcription	Brain Anterior Caudate	brain
8	chr9:8761600-8777600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:8761800-8764200	Weak transcription	Fetal Brain Female	brain
10	chr9:8762000-8764000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:8762000-8769400	Weak transcription	Brain Substantia Nigra	brain
12	chr9:8762600-8779000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:8762800-8778600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:8763000-8764800	Enhancers	Brain Hippocampus Middle	brain
15	chr9:8763000-8769200	Weak transcription	Brain Angular Gyrus	brain
16	chr9:8763200-8769000	Weak transcription	Ovary	ovary
17	chr9:8763200-8778000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr9:8763200-8780600	Weak transcription	Fetal Kidney	kidney
19	chr9:8763800-8770000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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