Variant report

Variant	rs1036670
Chromosome Location	chr2:12153132-12153133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12471493	0.82[ASN][1000 genomes]
rs13007105	0.87[ASN][1000 genomes]
rs2380405	0.90[ASN][1000 genomes]
rs6432249	0.90[ASN][1000 genomes]
rs6432250	0.90[ASN][1000 genomes]
rs6744092	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs751578	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs751579	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7560369	0.82[ASN][1000 genomes]
rs7566729	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12146600-12153600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:12147400-12154000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:12147800-12153800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:12149200-12154000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:12149400-12153200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr2:12149800-12154200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:12150000-12153800	Weak transcription	NHDF-Ad	bronchial
8	chr2:12150000-12154000	Weak transcription	K562	blood
9	chr2:12150000-12154000	Weak transcription	Osteobl	bone
10	chr2:12150200-12153800	Weak transcription	NHLF	lung
11	chr2:12150400-12153800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr2:12150400-12153800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:12150400-12154000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:12150800-12153800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr2:12151200-12153800	Weak transcription	HSMMtube	muscle
16	chr2:12151800-12154000	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:12152000-12153600	Weak transcription	HSMM	muscle
18	chr2:12152800-12155000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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