Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:12155340..12157815-chr2:12177536..12179462,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10210269	0.88[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs1036670	0.90[ASN][1000 genomes]
rs10929776	0.94[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs10929781	0.84[ASN][1000 genomes]
rs11675063	0.84[ASN][1000 genomes]
rs12471493	0.91[ASN][1000 genomes]
rs12987412	0.84[ASN][1000 genomes]
rs13007105	0.96[ASN][1000 genomes]
rs1550398	0.94[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs2165219	0.84[ASN][1000 genomes]
rs2165220	0.84[ASN][1000 genomes]
rs6432249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726561	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs6744092	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs751578	0.90[ASN][1000 genomes]
rs751579	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7560369	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7563182	0.81[ASN][1000 genomes]
rs7566729	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7584343	0.84[ASN][1000 genomes]
rs7584367	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv999704	chr2:12153766-12243960	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12155000-12158600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:12155000-12158600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr2:12155000-12159200	Weak transcription	Primary B cells from cord blood	blood
4	chr2:12155000-12164000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:12155200-12157800	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:12155400-12157800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:12155400-12159800	Weak transcription	HSMMtube	muscle
8	chr2:12156400-12156600	Enhancers	Fetal Brain Female	brain
9	chr2:12156400-12157000	Enhancers	Spleen	Spleen

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