Variant report

Variant	rs1037144
Chromosome Location	chr1:159567848-159567849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr1:159567632-159568682	A549	lung:	n/a	n/a
2	TEAD4	chr1:159567734-159568499	A549	lung:	n/a	n/a
3	TEAD4	chr1:159567813-159568418	ECC-1	luminal epithelium:	n/a	n/a
4	FOSL2	chr1:159567780-159568498	A549	lung:	n/a	n/a
5	SP1	chr1:159567673-159568573	A549	lung:	n/a	n/a
6	EP300	chr1:159567844-159568401	T-47D	breast:	n/a	n/a
7	TEAD4	chr1:159567796-159568574	A549	lung:	n/a	n/a
8	SP1	chr1:159567749-159568611	A549	lung:	n/a	n/a
9	GATA3	chr1:159567621-159568726	A549	lung:	n/a	chr1:159568025-159568041
10	TCF12	chr1:159567844-159568537	SK-N-SH	brain:	n/a	n/a
11	EP300	chr1:159567687-159568632	A549	lung:	n/a	n/a
12	FOXA1	chr1:159567713-159568430	T-47D	breast:	n/a	n/a
13	TEAD4	chr1:159567796-159568415	SK-N-SH	brain:	n/a	n/a
14	GABPA	chr1:159567843-159568360	A549	lung:	n/a	n/a
15	EP300	chr1:159567787-159568537	SK-N-SH	brain:	n/a	n/a
16	GATA3	chr1:159567830-159568389	SK-N-SH	brain:	n/a	chr1:159568025-159568041
17	CEBPB	chr1:159567759-159568519	A549	lung:	n/a	n/a
18	POLR2A	chr1:159567832-159568608	HUVEC	blood vessel:	n/a	n/a
19	CEBPB	chr1:159567829-159568526	IMR90	lung:	n/a	n/a
20	TCF12	chr1:159567821-159568606	SK-N-SH	brain:	n/a	n/a
21	EP300	chr1:159567665-159568595	A549	lung:	n/a	n/a
22	TCF12	chr1:159567594-159568593	A549	lung:	n/a	n/a
23	FOS	chr1:159567736-159568458	HUVEC	blood vessel:	n/a	n/a
24	MAX	chr1:159567808-159568569	A549	lung:	n/a	n/a

Variant related genes	Relation type
OR10J6P	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1037143	0.82[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1037145	0.82[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494329	0.90[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1156411	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11804578	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1446966	0.82[ASW][hapmap];0.81[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.92[JPT][hapmap];0.88[TSI][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1470516	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1562388	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17423917	0.85[ASN][1000 genomes]
rs17457476	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1955160	0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2121479	0.83[ASN][1000 genomes]
rs2244698	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2794523	0.81[CEU][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2794524	0.87[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3753867	0.87[CHD][hapmap];0.92[JPT][hapmap]
rs3753868	0.87[CHD][hapmap];0.92[JPT][hapmap]
rs3753869	0.87[CHD][hapmap];0.92[JPT][hapmap]
rs3753870	0.92[JPT][hapmap]
rs4656843	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61823708	0.83[ASN][1000 genomes]
rs6664910	0.85[ASN][1000 genomes]
rs6695377	0.90[ASN][1000 genomes]
rs6695494	0.90[ASN][1000 genomes]
rs765571	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9793151	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159563800-159573400	Weak transcription	Liver	Liver
2	chr1:159564000-159569400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:159565400-159569200	Enhancers	HUVEC	blood vessel
4	chr1:159566400-159569000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:159566600-159568600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:159566800-159568800	Enhancers	NHEK	skin
7	chr1:159566800-159569200	Enhancers	HMEC	breast
8	chr1:159567000-159568600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:159567000-159568800	Enhancers	Osteobl	bone
10	chr1:159567200-159569000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:159567400-159568000	Flanking Active TSS	NH-A	brain
12	chr1:159567400-159568600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr1:159567400-159568600	Enhancers	Hela-S3	cervix
14	chr1:159567400-159568800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:159567400-159569000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:159567400-159569000	Enhancers	Placenta	Placenta
17	chr1:159567600-159568000	Flanking Active TSS	HSMM	muscle
18	chr1:159567600-159568000	Flanking Active TSS	HSMMtube	muscle
19	chr1:159567600-159568400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr1:159567600-159568400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr1:159567600-159568400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:159567600-159568600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr1:159567600-159569000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:159567600-159569000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:159567800-159568200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:159567800-159568400	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links