Variant report

Variant	rs765571
Chromosome Location	chr1:159570160-159570161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-APCS-1	chr1:159570039-159570210	NONHSAT007007
2	lnc-APCS-1	chr1:159569437-159570210	NONHSAT007006

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1037143	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1037144	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1037145	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10494329	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1156411	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11804578	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1446966	0.87[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1470516	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1562388	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17423917	0.88[ASN][1000 genomes]
rs17457476	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1955160	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2121479	0.85[ASN][1000 genomes]
rs2197619	0.83[EUR][1000 genomes]
rs2244698	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2794523	0.88[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2794524	0.91[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3753867	0.91[JPT][hapmap];0.82[YRI][hapmap]
rs3753868	0.91[JPT][hapmap];0.82[YRI][hapmap]
rs3753869	0.91[JPT][hapmap];0.82[YRI][hapmap]
rs3753870	0.92[JPT][hapmap]
rs4656843	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61823708	0.85[ASN][1000 genomes]
rs61823709	0.82[ASN][1000 genomes]
rs6664910	0.83[ASN][1000 genomes]
rs6681315	0.80[EUR][1000 genomes]
rs6695377	0.92[ASN][1000 genomes]
rs6695494	0.92[ASN][1000 genomes]
rs9793151	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159563800-159573400	Weak transcription	Liver	Liver
2	chr1:159568800-159570400	Weak transcription	NHEK	skin
3	chr1:159569000-159570200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:159569000-159570400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:159569000-159571200	Weak transcription	HSMMtube	muscle
6	chr1:159569200-159570600	Weak transcription	HMEC	breast
7	chr1:159569600-159570600	Weak transcription	HSMM	muscle

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