Variant report

Variant	rs6681315
Chromosome Location	chr1:159531750-159531751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1037143	0.84[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs1037144	0.82[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap]
rs1037145	0.84[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs10494329	0.82[CHD][hapmap];0.92[JPT][hapmap]
rs10797050	0.90[ASN][1000 genomes]
rs10908736	0.88[ASN][1000 genomes]
rs10908737	0.88[ASN][1000 genomes]
rs11265240	0.90[ASN][1000 genomes]
rs1156411	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11804578	0.92[JPT][hapmap]
rs1374486	0.82[ASN][1000 genomes]
rs1446966	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1562384	0.88[ASN][1000 genomes]
rs1562388	0.81[EUR][1000 genomes]
rs17457476	0.92[JPT][hapmap]
rs1900393	0.90[ASN][1000 genomes]
rs1955160	0.86[CHD][hapmap];0.92[JPT][hapmap]
rs2197619	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2244698	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2794523	0.91[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2794524	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3753867	0.84[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3753868	0.84[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3753869	0.84[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3753870	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[ASN][1000 genomes]
rs61582984	0.84[ASN][1000 genomes]
rs6689429	0.90[ASN][1000 genomes]
rs7527322	0.82[ASN][1000 genomes]
rs7541411	0.86[ASN][1000 genomes]
rs765571	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6681315	CCDC19	cis	parietal	SCAN
rs6681315	APCS	cis	cerebellum	SCAN
rs6681315	AQP10	cis	cerebellum	SCAN
rs6681315	HSPA6	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159531200-159533200	Enhancers	Liver	Liver

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