Variant report

Variant	rs1037910
Chromosome Location	chr4:91825652-91825653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10012191	0.83[JPT][hapmap]
rs11947460	0.83[EUR][1000 genomes]
rs13135875	0.90[JPT][hapmap]
rs1551773	0.89[JPT][hapmap]
rs2061015	0.90[JPT][hapmap]
rs9994801	0.85[CEU][hapmap];0.84[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2755332	chr4:91782522-91869222	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv3440957	chr4:91815823-91840336	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1037910	ATOH1	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91823200-91826000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:91824800-91826000	Enhancers	HUVEC	blood vessel
3	chr4:91824800-91826400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:91825200-91825800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:91825200-91826200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:91825200-91826400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:91825200-91826800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:91825200-91826800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:91825400-91825800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:91825400-91825800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:91825400-91826600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:91825600-91826000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links