Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10012191	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.82[LWK][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs1037910	0.89[JPT][hapmap]
rs11097271	0.90[GIH][hapmap]
rs11097273	0.96[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs11097277	0.84[CEU][hapmap]
rs11097279	0.82[ASN][1000 genomes]
rs12647823	0.82[ASN][1000 genomes]
rs13135875	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs17249857	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs2054334	1.00[CEU][hapmap]
rs2061015	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs6532253	0.90[GIH][hapmap]
rs71611412	0.82[ASN][1000 genomes]
rs7657375	0.84[CEU][hapmap];0.96[GIH][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap]
rs7672486	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7683787	0.96[GIH][hapmap];0.93[TSI][hapmap]
rs7697260	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7697269	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9307092	0.81[CEU][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs9994918	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2755332	chr4:91782522-91869222	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv521606	chr4:91847796-91856308	Inactive region	Chromatin interactive region	n/a	n/a	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1551773	ATOH1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: