Variant report

Variant	rs7657375
Chromosome Location	chr4:91833835-91833836
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10012191	0.96[GIH][hapmap];0.93[TSI][hapmap]
rs10212805	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11097271	0.92[ASW][hapmap];0.89[CEU][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap]
rs11097273	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs11097275	0.87[CEU][hapmap];0.94[YRI][hapmap]
rs11097277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13131843	1.00[YRI][hapmap]
rs13135875	0.84[CEU][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap]
rs1551773	0.84[CEU][hapmap];0.96[GIH][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap]
rs17249857	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1993748	0.89[CEU][hapmap]
rs2054334	0.84[CEU][hapmap]
rs2061015	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs28643477	0.82[TSI][hapmap]
rs6532253	0.84[ASW][hapmap];0.92[CEU][hapmap];0.93[GIH][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap]
rs6824383	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6855137	0.89[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7660952	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs7672486	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7683238	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs7683403	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs7683787	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7697260	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7697269	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9994801	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2755332	chr4:91782522-91869222	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv3440957	chr4:91815823-91840336	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7657375	ATOH1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links