Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10212805	0.82[EUR][1000 genomes]
rs11097271	0.89[CEU][hapmap]
rs11097273	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11097275	0.87[CEU][hapmap]
rs11097277	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs13135875	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs1551773	0.84[CEU][hapmap]
rs1993748	0.89[CEU][hapmap]
rs2054334	0.85[CEU][hapmap]
rs2061015	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs6532253	0.92[CEU][hapmap]
rs6824383	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6855137	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs7657375	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7660952	0.89[CEU][hapmap]
rs7672486	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7683238	0.89[CEU][hapmap]
rs7683403	0.89[CEU][hapmap]
rs7683787	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7697260	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7697269	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2755332	chr4:91782522-91869222	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv3440957	chr4:91815823-91840336	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91824800-91826400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:91825200-91826400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:91825200-91826800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:91825200-91826800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:91825400-91826600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:91826000-91827000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr4:91826200-91826800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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