Variant report

Variant	rs1038363
Chromosome Location	chr2:145601462-145601463
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:145474202..145476398-chr2:145598840..145601823,2	K562	blood:
2	chr2:145589399..145590940-chr2:145600068..145601853,2	K562	blood:
3	chr2:145601103..145603405-chr2:145606615..145608386,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10181009	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10196836	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1085460	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1085461	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1092395	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10928230	0.90[ASN][1000 genomes]
rs11899456	0.80[ASN][1000 genomes]
rs13018654	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13028678	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13396130	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1384781	0.90[ASN][1000 genomes]
rs1528186	0.82[ASN][1000 genomes]
rs2381663	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3856365	0.83[ASN][1000 genomes]
rs706624	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs706625	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs786486	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs786487	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs786489	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs786490	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs786492	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs786493	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs786494	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs786495	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs786498	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs786499	0.83[ASN][1000 genomes]
rs786500	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs786502	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9646654	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs987762	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834397	chr2:145439528-145608628	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145594400-145607200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:145601400-145601800	Enhancers	NHDF-Ad	bronchial

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