Variant report

Variant	rs10928230
Chromosome Location	chr2:145599194-145599195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:145474202..145476398-chr2:145598840..145601823,2	K562	blood:
2	chr2:145593121..145596607-chr2:145597907..145600679,5	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10181009	0.88[ASN][1000 genomes]
rs10196836	0.90[ASN][1000 genomes]
rs1038363	0.90[ASN][1000 genomes]
rs1085460	0.88[ASN][1000 genomes]
rs1085461	0.87[ASN][1000 genomes]
rs1092395	0.87[ASN][1000 genomes]
rs10928227	0.83[JPT][hapmap];0.87[MEX][hapmap]
rs11883829	0.83[JPT][hapmap];0.81[MEX][hapmap]
rs11899456	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11902294	0.89[JPT][hapmap]
rs12623452	0.92[JPT][hapmap]
rs13015001	0.83[JPT][hapmap]
rs13018654	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13028678	0.89[ASN][1000 genomes]
rs13396130	0.88[ASN][1000 genomes]
rs1384781	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1427509	0.83[JPT][hapmap]
rs1483491	0.83[JPT][hapmap]
rs1528186	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1564697	0.83[JPT][hapmap];0.81[MEX][hapmap]
rs2381651	0.83[JPT][hapmap]
rs2381663	0.87[ASN][1000 genomes]
rs35099259	0.92[JPT][hapmap]
rs3856365	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4662232	0.83[JPT][hapmap];0.86[MEX][hapmap]
rs60111010	0.86[ASN][1000 genomes]
rs706624	0.87[ASN][1000 genomes]
rs706625	0.87[ASN][1000 genomes]
rs786486	0.87[ASN][1000 genomes]
rs786487	0.87[ASN][1000 genomes]
rs786489	0.88[ASN][1000 genomes]
rs786490	0.87[ASN][1000 genomes]
rs786492	0.87[ASN][1000 genomes]
rs786493	0.87[ASN][1000 genomes]
rs786494	0.89[ASN][1000 genomes]
rs786495	0.89[ASN][1000 genomes]
rs786498	0.88[ASN][1000 genomes]
rs786499	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs786500	0.90[ASN][1000 genomes]
rs786502	0.90[ASN][1000 genomes]
rs900554	0.83[JPT][hapmap]
rs9646654	0.90[ASN][1000 genomes]
rs980772	0.83[JPT][hapmap]
rs987762	0.88[ASN][1000 genomes]
rs990847	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834397	chr2:145439528-145608628	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145594400-145607200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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