Variant report

Variant	rs10928227
Chromosome Location	chr2:145515296-145515297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10200647	0.89[ASN][1000 genomes]
rs10203655	0.89[ASN][1000 genomes]
rs10432351	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10496966	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10803510	0.83[JPT][hapmap]
rs10928225	0.89[ASN][1000 genomes]
rs10928226	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11674690	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11679253	0.92[ASN][1000 genomes]
rs11883829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs11900456	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11902294	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs12104619	0.84[ASN][1000 genomes]
rs12471698	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12478142	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12611966	0.87[ASN][1000 genomes]
rs12623452	1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12991932	0.88[ASN][1000 genomes]
rs12997597	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13003467	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13008442	0.97[ASN][1000 genomes]
rs13015001	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13016064	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13032840	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13413613	0.86[ASN][1000 genomes]
rs1346344	0.83[JPT][hapmap]
rs1351734	0.89[ASN][1000 genomes]
rs1365902	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1365905	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1384779	0.87[ASN][1000 genomes]
rs1384783	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1427500	0.83[JPT][hapmap]
rs1427507	0.83[JPT][hapmap]
rs1427509	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1483491	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1483499	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1529386	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1529387	0.82[ASN][1000 genomes]
rs1559961	0.83[ASN][1000 genomes]
rs1559962	0.83[ASN][1000 genomes]
rs1564697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1896453	0.84[ASN][1000 genomes]
rs1896454	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1905347	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1994155	0.87[ASN][1000 genomes]
rs2086748	0.88[ASN][1000 genomes]
rs2162571	0.83[JPT][hapmap]
rs2195114	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2195115	0.85[ASN][1000 genomes]
rs2254435	0.90[ASN][1000 genomes]
rs2381651	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35099259	1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs3856364	0.87[ASN][1000 genomes]
rs4458150	0.83[ASN][1000 genomes]
rs4471836	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4662231	0.86[ASN][1000 genomes]
rs4662232	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4662393	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61440197	0.81[ASN][1000 genomes]
rs6707047	0.92[ASN][1000 genomes]
rs6728198	0.92[ASN][1000 genomes]
rs6745079	0.84[ASN][1000 genomes]
rs72991962	0.81[ASN][1000 genomes]
rs7575857	0.86[ASN][1000 genomes]
rs7579453	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7580571	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs900554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs958500	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs958501	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs980772	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs990847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834397	chr2:145439528-145608628	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145506600-145516400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links