Variant report

Variant	rs1896453
Chromosome Location	chr2:145415828-145415829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:145412857..145414621-chr2:145415178..145417643,2	K562	blood:
2	chr2:145409535..145412202-chr2:145415211..145417473,3	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10200647	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10203655	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10205995	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10432351	0.83[ASN][1000 genomes]
rs10496966	0.93[ASN][1000 genomes]
rs10928225	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10928226	0.95[ASN][1000 genomes]
rs10928227	1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs11674690	0.82[ASN][1000 genomes]
rs11679253	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11883829	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs11900456	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11902294	0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12104619	0.98[ASN][1000 genomes]
rs12471698	0.94[ASN][1000 genomes]
rs12478142	0.94[ASN][1000 genomes]
rs12611966	0.83[ASN][1000 genomes]
rs12623452	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12991932	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12997597	0.90[ASN][1000 genomes]
rs13003467	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13008442	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13015001	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs13016064	0.93[ASN][1000 genomes]
rs13032840	0.92[ASN][1000 genomes]
rs13413613	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1351734	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1365902	0.91[ASN][1000 genomes]
rs1365905	0.93[ASN][1000 genomes]
rs1384779	0.83[ASN][1000 genomes]
rs1384783	0.94[ASN][1000 genomes]
rs1427509	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs1483491	1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs1483499	0.84[ASN][1000 genomes]
rs1529386	0.94[ASN][1000 genomes]
rs1529387	0.94[ASN][1000 genomes]
rs1559961	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1559962	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1564697	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs1896454	0.88[ASN][1000 genomes]
rs1905347	0.83[ASN][1000 genomes]
rs1994155	0.83[ASN][1000 genomes]
rs2086748	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2195114	0.93[ASN][1000 genomes]
rs2195115	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2254435	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2381651	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs35099259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3856364	0.91[ASN][1000 genomes]
rs4458150	0.86[ASN][1000 genomes]
rs4471836	0.94[ASN][1000 genomes]
rs4662231	0.84[ASN][1000 genomes]
rs4662232	1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs4662393	0.89[ASN][1000 genomes]
rs61440197	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6707047	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6728198	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6745079	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72991962	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7575857	0.84[ASN][1000 genomes]
rs7579453	0.93[ASN][1000 genomes]
rs7580571	0.94[ASN][1000 genomes]
rs900554	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs958500	0.94[ASN][1000 genomes]
rs958501	0.94[ASN][1000 genomes]
rs980772	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs990847	1.00[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067624	chr2:144657717-145425705	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv531413	chr2:144657717-145425705	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv916172	chr2:144970681-145425713	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv948474	chr2:145035890-145436665	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv531662	chr2:145219415-145422833	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv529501	chr2:145257682-145485605	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145412000-145417200	Weak transcription	Esophagus	oesophagus
2	chr2:145412400-145417600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr2:145412800-145416400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:145412800-145416800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr2:145413800-145422000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:145415200-145416200	Enhancers	Muscle Satellite Cultured Cells	--

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