Variant report

Variant	rs60111010
Chromosome Location	chr2:145598449-145598450
allele	-/AT/ATAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10181009	0.80[ASN][1000 genomes]
rs10196836	0.82[ASN][1000 genomes]
rs1085460	0.80[ASN][1000 genomes]
rs10928230	0.86[ASN][1000 genomes]
rs13018654	0.80[ASN][1000 genomes]
rs13028678	0.81[ASN][1000 genomes]
rs13396130	0.80[ASN][1000 genomes]
rs1384781	0.86[ASN][1000 genomes]
rs1528186	0.81[ASN][1000 genomes]
rs3856365	0.82[ASN][1000 genomes]
rs786489	0.80[ASN][1000 genomes]
rs786494	0.81[ASN][1000 genomes]
rs786495	0.81[ASN][1000 genomes]
rs786498	0.80[ASN][1000 genomes]
rs786499	0.82[ASN][1000 genomes]
rs786500	0.82[ASN][1000 genomes]
rs786502	0.80[ASN][1000 genomes]
rs9646654	0.82[ASN][1000 genomes]
rs987762	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834397	chr2:145439528-145608628	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145594400-145607200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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