Variant report

Variant	rs1038391
Chromosome Location	chr3:47583196-47583197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11130134	1.00[EUR][1000 genomes]
rs11714816	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12631697	0.83[YRI][hapmap]
rs13091992	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1486916	1.00[EUR][1000 genomes]
rs2170814	1.00[EUR][1000 genomes]
rs2351249	1.00[EUR][1000 genomes]
rs4383546	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4858833	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4858834	1.00[EUR][1000 genomes]
rs4858855	1.00[EUR][1000 genomes]
rs55736379	1.00[EUR][1000 genomes]
rs6791025	0.89[AMR][1000 genomes]
rs73831515	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47578600-47583800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:47578800-47586400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:47579200-47583200	Weak transcription	Brain Anterior Caudate	brain
4	chr3:47582000-47583800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:47582200-47583600	Bivalent Enhancer	HepG2	liver
6	chr3:47582400-47584000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:47582400-47584200	Weak transcription	Esophagus	oesophagus
8	chr3:47582800-47584200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:47582800-47584800	Enhancers	Adipose Nuclei	Adipose
10	chr3:47582800-47584800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr3:47583000-47583200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:47583000-47583200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:47583000-47583800	Enhancers	K562	blood
14	chr3:47583000-47584800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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