Variant report

Variant	rs73831515
Chromosome Location	chr3:47648811-47648812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47644023..47648902-chr3:47649054..47653658,7	K562	blood:

Variant related genes	Relation type
ENSG00000173473	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1038391	1.00[EUR][1000 genomes]
rs11130134	1.00[EUR][1000 genomes]
rs11714816	1.00[EUR][1000 genomes]
rs1486916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1809487	1.00[AMR][1000 genomes]
rs2170814	1.00[EUR][1000 genomes]
rs2351249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593817	1.00[AMR][1000 genomes]
rs319683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34675858	1.00[AMR][1000 genomes]
rs4383546	1.00[EUR][1000 genomes]
rs4858833	1.00[EUR][1000 genomes]
rs4858834	1.00[EUR][1000 genomes]
rs4858855	1.00[EUR][1000 genomes]
rs55736379	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6442066	1.00[AMR][1000 genomes]
rs73831528	0.85[AFR][1000 genomes]
rs900691	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1835200	chr3:47642233-47654375	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47621000-47651600	Weak transcription	Right Atrium	heart
2	chr3:47621000-47653400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:47622600-47653400	Weak transcription	Stomach Mucosa	stomach
4	chr3:47623400-47655000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:47624000-47653200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:47625400-47651400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:47625600-47651200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:47626200-47698600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:47626400-47655600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:47626400-47680600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:47626600-47688600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:47626600-47699800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:47626800-47680800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr3:47631000-47650000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:47631200-47650200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:47632200-47649200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:47632200-47649800	Weak transcription	Colonic Mucosa	Colon
18	chr3:47632200-47651200	Weak transcription	Right Ventricle	heart
19	chr3:47632400-47651400	Weak transcription	Gastric	stomach
20	chr3:47632400-47651400	Weak transcription	Pancreas	Pancrea
21	chr3:47632400-47652800	Weak transcription	Aorta	Aorta
22	chr3:47632400-47658600	Weak transcription	A549	lung
23	chr3:47632400-47660800	Weak transcription	Esophagus	oesophagus
24	chr3:47632800-47649800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr3:47632800-47650000	Weak transcription	NHLF	lung
26	chr3:47634200-47661000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:47635000-47651400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr3:47635000-47686800	Strong transcription	Dnd41	blood
29	chr3:47636000-47649200	Weak transcription	HMEC	breast
30	chr3:47636600-47649000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr3:47636800-47651400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr3:47636800-47672800	Weak transcription	Small Intestine	intestine
33	chr3:47637200-47665000	Strong transcription	Primary T cells from cord blood	blood
34	chr3:47638000-47681200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:47638200-47665800	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr3:47638800-47651400	Strong transcription	Fetal Muscle Leg	muscle
37	chr3:47639000-47652600	Strong transcription	Fetal Intestine Large	intestine
38	chr3:47639200-47653600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:47639200-47654600	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr3:47639200-47655000	Strong transcription	Primary B cells from peripheral blood	blood
41	chr3:47639200-47655200	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr3:47639200-47655200	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr3:47639200-47655600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr3:47639200-47675800	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr3:47640000-47651400	Weak transcription	Spleen	Spleen
46	chr3:47641800-47649200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:47641800-47655800	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr3:47642800-47653600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:47643600-47649800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr3:47643600-47653600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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