Variant report

Variant	rs73831528
Chromosome Location	chr3:47765831-47765832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:47745986..47747604-chr3:47764734..47766437,2	MCF-7	breast:
2	chr3:47765531..47768373-chr3:47769962..47773520,5	K562	blood:
3	chr3:47765075..47767679-chr3:47818543..47820695,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55736379	0.81[AFR][1000 genomes]
rs73831515	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003072	chr3:47673628-47869154	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv876758	chr3:47681881-47842234	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases
3	nsv876759	chr3:47725315-47830741	Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
4	nsv834679	chr3:47749475-47924006	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47656600-47790800	Strong transcription	Fetal Thymus	thymus
2	chr3:47701600-47800400	Strong transcription	Dnd41	blood
3	chr3:47701600-47819800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:47702200-47790400	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:47704000-47788600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:47707200-47780800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:47707200-47781400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr3:47723400-47766200	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr3:47727600-47819400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:47738000-47772600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:47738200-47779600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr3:47738400-47766800	Strong transcription	Primary B cells from peripheral blood	blood
13	chr3:47742000-47779600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr3:47744400-47776800	Weak transcription	Esophagus	oesophagus
15	chr3:47746000-47779200	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr3:47746200-47766400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:47746200-47773800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:47747200-47772400	Weak transcription	Brain Substantia Nigra	brain
19	chr3:47748400-47790600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr3:47748800-47767800	Weak transcription	Fetal Brain Male	brain
21	chr3:47752200-47768000	Weak transcription	Small Intestine	intestine
22	chr3:47752800-47770800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:47753200-47775400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:47754400-47766000	Weak transcription	Colon Smooth Muscle	Colon
25	chr3:47755600-47767800	Weak transcription	HMEC	breast
26	chr3:47755600-47770000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr3:47755600-47772400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr3:47755600-47775600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr3:47755800-47768600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr3:47755800-47774400	Weak transcription	Colonic Mucosa	Colon
31	chr3:47755800-47776200	Weak transcription	Aorta	Aorta
32	chr3:47756000-47775600	Weak transcription	Brain Angular Gyrus	brain
33	chr3:47757200-47776200	Weak transcription	Brain Hippocampus Middle	brain
34	chr3:47757200-47784600	Weak transcription	Right Atrium	heart
35	chr3:47758400-47768000	Weak transcription	HUVEC	blood vessel
36	chr3:47758400-47768200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:47758400-47773400	Weak transcription	NHDF-Ad	bronchial
38	chr3:47758600-47776800	Weak transcription	NHLF	lung
39	chr3:47758800-47767800	Weak transcription	A549	lung
40	chr3:47758800-47779800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:47759200-47771600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr3:47760200-47768000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:47761200-47766400	Strong transcription	Primary T cells from cord blood	blood
44	chr3:47761400-47768000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr3:47761400-47769200	Weak transcription	Lung	lung
46	chr3:47761600-47766000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr3:47761600-47767800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr3:47761600-47767800	Weak transcription	Fetal Brain Female	brain
49	chr3:47761600-47768400	Weak transcription	Spleen	Spleen
50	chr3:47761600-47769200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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