Variant report

Variant	rs1038969
Chromosome Location	chr12:105163579-105163580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105146747..105148409-chr12:105161769..105164567,2	K562	blood:
2	chr12:105154675..105157648-chr12:105161416..105163979,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11112189	0.98[ASN][1000 genomes]
rs11834087	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12307301	0.89[ASN][1000 genomes]
rs12320887	0.90[ASN][1000 genomes]
rs12579202	0.88[ASN][1000 genomes]
rs12579945	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12580114	0.81[ASN][1000 genomes]
rs12580794	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12582312	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17036358	0.98[ASN][1000 genomes]
rs17036429	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17036433	0.86[ASN][1000 genomes]
rs4369494	0.81[ASN][1000 genomes]
rs57144501	0.83[ASN][1000 genomes]
rs57685442	0.81[ASN][1000 genomes]
rs59079144	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60976244	0.81[ASN][1000 genomes]
rs61129422	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61262317	0.92[ASN][1000 genomes]
rs61587191	0.92[ASN][1000 genomes]
rs7301525	0.92[ASN][1000 genomes]
rs73383408	0.83[ASN][1000 genomes]
rs73383420	0.83[ASN][1000 genomes]
rs73383435	0.81[ASN][1000 genomes]
rs73383441	0.81[ASN][1000 genomes]
rs73394174	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73394185	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73394186	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73396157	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73396159	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73399912	0.88[ASN][1000 genomes]
rs73399925	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73399927	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73399929	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73399931	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73399934	0.81[ASN][1000 genomes]
rs73399944	0.81[ASN][1000 genomes]
rs73399956	0.81[ASN][1000 genomes]
rs73399960	0.81[ASN][1000 genomes]
rs73399968	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899496	chr12:105152391-105199038	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv899497	chr12:105155291-105247010	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105161800-105163600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr12:105161800-105163600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:105162800-105164000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:105162800-105164000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:105163400-105163600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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