Variant report

Variant	rs11834087
Chromosome Location	chr12:105221328-105221329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:104595107..104595677-chr12:105221074..105221593,2	K562	blood:
2	chr12:105184083..105184965-chr12:105220814..105221546,2	K562	blood:
3	chr12:105073759..105074369-chr12:105221012..105221706,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1038969	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10778350	0.86[EUR][1000 genomes]
rs11112189	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12307301	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12320887	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12321404	0.86[EUR][1000 genomes]
rs12579120	1.00[JPT][hapmap]
rs12579129	1.00[JPT][hapmap]
rs12579202	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12579441	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12579469	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12579505	0.88[ASN][1000 genomes]
rs12579790	1.00[JPT][hapmap]
rs12579945	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12580114	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12580128	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12580384	1.00[JPT][hapmap]
rs12580794	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12582090	1.00[JPT][hapmap]
rs12582312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17036358	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17036429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17036433	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17036489	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17036545	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4369494	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4545639	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57144501	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57685442	0.91[ASN][1000 genomes]
rs59079144	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60976244	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61129422	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61262317	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61587191	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7301525	0.83[ASN][1000 genomes]
rs7302213	0.86[EUR][1000 genomes]
rs73383408	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73383420	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73383435	0.91[ASN][1000 genomes]
rs73383439	0.87[ASN][1000 genomes]
rs73383441	0.91[ASN][1000 genomes]
rs73383467	0.90[ASN][1000 genomes]
rs73383473	0.90[ASN][1000 genomes]
rs73394174	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73394185	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73394186	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73396157	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396159	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399912	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73399925	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73399927	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73399929	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73399931	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73399934	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73399944	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73399947	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73399956	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73399960	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73399968	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7971315	0.86[EUR][1000 genomes]
rs7971613	0.86[EUR][1000 genomes]
rs7976092	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899497	chr12:105155291-105247010	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105211000-105237600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:105214200-105221800	Weak transcription	Pancreas	Pancrea
3	chr12:105219800-105223800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:105219800-105240800	Weak transcription	Gastric	stomach
5	chr12:105220000-105221800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr12:105220000-105222000	Strong transcription	Duodenum Mucosa	Duodenum
7	chr12:105220000-105223000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr12:105220200-105223600	Weak transcription	Stomach Mucosa	stomach
9	chr12:105220400-105221400	Weak transcription	Fetal Stomach	stomach
10	chr12:105220400-105222200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr12:105220400-105229000	Strong transcription	Liver	Liver
12	chr12:105220400-105239600	Weak transcription	Aorta	Aorta
13	chr12:105220800-105260600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr12:105221000-105227000	Weak transcription	Rectal Mucosa Donor 31	rectum

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