Variant report
Variant | rs12579469 |
---|---|
Chromosome Location | chr12:105337367-105337368 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000062716 | Chromatin interaction |
ENSG00000136052 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11112189 | 0.82[ASN][1000 genomes] |
rs11834087 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
rs12579120 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
rs12579129 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
rs12579202 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs12579441 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs12579505 | 0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs12579790 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
rs12579945 | 0.82[ASN][1000 genomes] |
rs12580114 | 0.85[ASN][1000 genomes] |
rs12580128 | 0.91[ASN][1000 genomes] |
rs12580384 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
rs12580794 | 0.82[ASN][1000 genomes] |
rs12581352 | 0.85[ASN][1000 genomes] |
rs12582090 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
rs12582312 | 0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes] |
rs17036358 | 0.82[ASN][1000 genomes] |
rs17036429 | 0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes] |
rs17036433 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs17036489 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs17036545 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs17036606 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
rs4369494 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs4545639 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs57144501 | 0.86[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs57685442 | 0.93[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs59079144 | 0.91[ASN][1000 genomes] |
rs60976244 | 0.94[ASN][1000 genomes] |
rs61129422 | 0.89[ASN][1000 genomes] |
rs73383408 | 0.86[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs73383420 | 0.86[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs73383435 | 0.99[ASN][1000 genomes] |
rs73383439 | 0.94[ASN][1000 genomes] |
rs73383441 | 0.99[ASN][1000 genomes] |
rs73383467 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs73383473 | 1.00[ASN][1000 genomes] |
rs73394174 | 0.82[ASN][1000 genomes] |
rs73394185 | 0.89[ASN][1000 genomes] |
rs73394186 | 0.89[ASN][1000 genomes] |
rs73396157 | 0.90[ASN][1000 genomes] |
rs73396159 | 0.90[ASN][1000 genomes] |
rs73399912 | 0.91[ASN][1000 genomes] |
rs73399925 | 0.89[ASN][1000 genomes] |
rs73399927 | 0.89[ASN][1000 genomes] |
rs73399929 | 0.89[ASN][1000 genomes] |
rs73399931 | 0.89[ASN][1000 genomes] |
rs73399934 | 0.94[ASN][1000 genomes] |
rs73399944 | 0.94[ASN][1000 genomes] |
rs73399947 | 0.93[ASN][1000 genomes] |
rs73399956 | 0.94[ASN][1000 genomes] |
rs73399960 | 0.94[ASN][1000 genomes] |
rs73399968 | 0.94[ASN][1000 genomes] |
rs7976092 | 0.96[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv899495 | chr12:104990469-105527011 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
2 | nsv899498 | chr12:105173598-105461620 | Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 22 gene(s) | inside rSNPs | diseases |
3 | nsv832505 | chr12:105315352-105497765 | Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:105323600-105338000 | Weak transcription | Pancreas | Pancrea |
2 | chr12:105332400-105342400 | Weak transcription | Gastric | stomach |
3 | chr12:105333200-105346200 | Weak transcription | HepG2 | liver |
4 | chr12:105336200-105337400 | Enhancers | Liver | Liver |
5 | chr12:105336200-105338200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
6 | chr12:105337200-105338800 | Enhancers | Stomach Mucosa | stomach |