Variant report

Variant	rs17036545
Chromosome Location	chr12:105342046-105342047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11112189	0.82[ASN][1000 genomes]
rs11834087	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12579120	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12579129	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12579202	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12579441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs12579469	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12579505	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12579790	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12579945	0.82[ASN][1000 genomes]
rs12580114	0.85[ASN][1000 genomes]
rs12580128	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12580384	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12580794	0.82[ASN][1000 genomes]
rs12581352	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12582090	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12582312	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17036358	0.82[ASN][1000 genomes]
rs17036429	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17036433	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17036489	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17036606	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4369494	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4545639	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs57144501	0.96[ASN][1000 genomes]
rs57685442	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59079144	0.91[ASN][1000 genomes]
rs60976244	0.94[ASN][1000 genomes]
rs61129422	0.89[ASN][1000 genomes]
rs73383408	0.96[ASN][1000 genomes]
rs73383420	0.96[ASN][1000 genomes]
rs73383435	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73383439	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73383441	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73383467	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73383473	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73383478	0.81[AMR][1000 genomes]
rs73383483	0.93[AMR][1000 genomes]
rs73394174	0.82[ASN][1000 genomes]
rs73394185	0.89[ASN][1000 genomes]
rs73394186	0.89[ASN][1000 genomes]
rs73396157	0.90[ASN][1000 genomes]
rs73396159	0.90[ASN][1000 genomes]
rs73399912	0.91[ASN][1000 genomes]
rs73399925	0.89[ASN][1000 genomes]
rs73399927	0.89[ASN][1000 genomes]
rs73399929	0.89[ASN][1000 genomes]
rs73399931	0.89[ASN][1000 genomes]
rs73399934	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73399944	0.94[ASN][1000 genomes]
rs73399947	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73399956	0.94[ASN][1000 genomes]
rs73399960	0.94[ASN][1000 genomes]
rs73399968	0.94[ASN][1000 genomes]
rs7976092	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
3	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105332400-105342400	Weak transcription	Gastric	stomach
2	chr12:105333200-105346200	Weak transcription	HepG2	liver
3	chr12:105338200-105344200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:105338200-105349000	Weak transcription	Pancreas	Pancrea
5	chr12:105338200-105351000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr12:105338400-105346600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:105338600-105342400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr12:105338800-105342400	Weak transcription	Stomach Mucosa	stomach
9	chr12:105341800-105342800	Enhancers	Liver	Liver
10	chr12:105342000-105342600	Enhancers	Adipose Nuclei	Adipose

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