Variant report
| Variant | rs1039180 |
|---|---|
| Chromosome Location | chr4:167079393-167079394 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10018884 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1039178 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10517877 | 0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10517878 | 0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10857377 | 0.95[ASN][1000 genomes] |
| rs11939812 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11946520 | 0.90[ASN][1000 genomes] |
| rs12645229 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12650688 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13108363 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13152109 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1497954 | 0.93[ASN][1000 genomes] |
| rs2201813 | 0.92[ASN][1000 genomes] |
| rs2201814 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2221058 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2874824 | 0.95[ASN][1000 genomes] |
| rs35123350 | 0.93[ASN][1000 genomes] |
| rs56707715 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs57563849 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6817910 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs713464 | 0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs713465 | 0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv821638 | chr4:166837633-167262625 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv830142 | chr4:166935555-167095922 | Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034421 | chr4:166961339-167893289 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv537339 | chr4:166961339-167893289 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv881029 | chr4:167060016-167284757 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:167075000-167079400 | Weak transcription | Fetal Kidney | kidney |
| 2 | chr4:167075200-167079400 | Weak transcription | Adipose Nuclei | Adipose |
