Variant report
Variant | rs6817910 |
---|---|
Chromosome Location | chr4:167096598-167096599 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10018884 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1039178 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1039180 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10517877 | 0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10517878 | 0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10857377 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11939812 | 0.92[ASN][1000 genomes] |
rs11946520 | 0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12645229 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12650688 | 0.89[ASN][1000 genomes] |
rs13108363 | 0.92[ASN][1000 genomes] |
rs13152109 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1497954 | 0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2201813 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2201814 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2221058 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2874824 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs35123350 | 0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs56707715 | 0.87[ASN][1000 genomes] |
rs57563849 | 0.92[ASN][1000 genomes] |
rs713464 | 0.89[ASN][1000 genomes] |
rs713465 | 0.89[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv821638 | chr4:166837633-167262625 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv1034421 | chr4:166961339-167893289 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv537339 | chr4:166961339-167893289 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | nsv881029 | chr4:167060016-167284757 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv596055 | chr4:167082557-167120941 | Active TSS Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:167095600-167096800 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr4:167096000-167097000 | Enhancers | HUVEC | blood vessel |