Variant report

Variant	rs1039466
Chromosome Location	chr4:59999983-59999984
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1039465	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13110374	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1393608	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1587141	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs168574	0.97[ASN][1000 genomes]
rs173356	0.97[ASN][1000 genomes]
rs357824	0.97[ASN][1000 genomes]
rs357825	0.97[ASN][1000 genomes]
rs357826	0.96[ASN][1000 genomes]
rs357830	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs357831	0.97[ASN][1000 genomes]
rs357835	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6551598	1.00[ASN][1000 genomes]
rs6843543	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6852453	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011113	chr4:59647956-60263029	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879045	chr4:59889898-60005301	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv879047	chr4:59900914-60005301	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv829946	chr4:59913771-60083867	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1012339	chr4:59996783-60022095	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:59999800-60002000	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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