Variant report

Variant	rs10399619
Chromosome Location	chr1:62862331-62862332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10889327	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1473752	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1473754	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1886829	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2065702	1.00[EUR][1000 genomes]
rs2095403	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4915616	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7543765	0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs945171	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62848000-62871800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:62856200-62862400	Weak transcription	NHEK	skin
3	chr1:62859600-62862400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:62861000-62865600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:62861200-62862600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:62861200-62866600	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:62862200-62862600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links