Variant report

Variant	rs945171
Chromosome Location	chr1:62867651-62867652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10399619	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10889327	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1473752	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2065702	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915616	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62848000-62871800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:62864800-62869600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:62866400-62867800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:62866400-62867800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:62866400-62867800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:62866400-62867800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:62866400-62868000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:62866400-62868200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:62866600-62868000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:62867000-62871800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:62867200-62868000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:62867200-62883600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:62867400-62872400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:62867400-62872400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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