Variant report

Variant	rs10400003
Chromosome Location	chr10:44810929-44810930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10400046	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60805419	1.00[AMR][1000 genomes]
rs7069386	1.00[AMR][1000 genomes]
rs7069387	1.00[AMR][1000 genomes]
rs7098262	1.00[AMR][1000 genomes]
rs73286691	1.00[AMR][1000 genomes]
rs73286700	1.00[AMR][1000 genomes]
rs73288709	1.00[AMR][1000 genomes]
rs73288717	1.00[AMR][1000 genomes]
rs73288721	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9943349	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3519047	chr10:44807996-44811694	Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44806600-44820800	Weak transcription	Right Atrium	heart
2	chr10:44807200-44822200	Weak transcription	Left Ventricle	heart
3	chr10:44807600-44820800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:44808000-44820000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44810000-44811200	Weak transcription	Fetal Thymus	thymus
6	chr10:44810600-44811400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:44810600-44811400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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