Variant report

Variant	rs7098262
Chromosome Location	chr10:44740348-44740349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10400003	1.00[AMR][1000 genomes]
rs10400046	1.00[AMR][1000 genomes]
rs169097	1.00[MEX][hapmap]
rs60805419	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069386	1.00[AMR][1000 genomes]
rs7069387	1.00[AMR][1000 genomes]
rs73286691	1.00[AMR][1000 genomes]
rs73286700	1.00[AMR][1000 genomes]
rs73288709	1.00[AMR][1000 genomes]
rs73288717	1.00[AMR][1000 genomes]
rs73288721	1.00[AMR][1000 genomes]
rs9943349	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44730200-44741200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:44738000-44745200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44739200-44741400	Enhancers	HepG2	liver
4	chr10:44739400-44740400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr10:44739400-44740400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:44739600-44740600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:44739600-44741000	Enhancers	Placenta	Placenta
8	chr10:44740200-44741400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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