Variant report

Variant	rs10400232
Chromosome Location	chr11:35257906-35257907
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35256103..35261501-chr11:35384186..35388588,8	MCF-7	breast:
2	chr11:35253589..35256594-chr11:35257104..35259626,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11033035	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7109359	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv897218	chr11:35241989-35261374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv897220	chr11:35242907-35261374	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv897221	chr11:35242907-35265444	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv897222	chr11:35244044-35261374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35233400-35259600	Weak transcription	Liver	Liver
2	chr11:35236800-35259600	Weak transcription	Psoas Muscle	Psoas
3	chr11:35237000-35259600	Weak transcription	HUVEC	blood vessel
4	chr11:35241200-35259600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:35243600-35258200	Weak transcription	GM12878-XiMat	blood
6	chr11:35245400-35259600	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:35247000-35258000	Weak transcription	Colonic Mucosa	Colon
8	chr11:35247000-35263200	Weak transcription	HSMMtube	muscle
9	chr11:35251400-35259400	Weak transcription	Left Ventricle	heart
10	chr11:35251400-35259800	Weak transcription	Gastric	stomach
11	chr11:35252200-35258000	Weak transcription	Placenta	Placenta
12	chr11:35252200-35259400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:35252400-35258600	Weak transcription	Fetal Lung	lung
14	chr11:35252400-35259400	Weak transcription	Lung	lung
15	chr11:35253000-35258000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:35253000-35259400	Weak transcription	Adipose Nuclei	Adipose
17	chr11:35253000-35260400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:35253400-35259400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:35253800-35258000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:35254000-35259400	Weak transcription	Brain Substantia Nigra	brain
21	chr11:35254600-35264000	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:35254600-35264000	Weak transcription	NHLF	lung
23	chr11:35255400-35266800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:35255600-35259600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr11:35255600-35260800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:35255800-35258800	Enhancers	Dnd41	blood
27	chr11:35256400-35258600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:35256400-35258800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:35256600-35258400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:35256600-35258600	Enhancers	HMEC	breast
31	chr11:35256600-35258800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:35256600-35259800	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr11:35256600-35260000	Enhancers	NHEK	skin
34	chr11:35256600-35260200	Enhancers	Primary T cells fromperipheralblood	blood
35	chr11:35256600-35260200	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr11:35256600-35260200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr11:35256600-35260400	Enhancers	Primary T cells from cord blood	blood
38	chr11:35256600-35260400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:35256600-35261200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr11:35256800-35258600	Enhancers	Hela-S3	cervix
41	chr11:35256800-35258800	Enhancers	NH-A	brain
42	chr11:35256800-35260000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr11:35256800-35260600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:35257000-35258600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:35257000-35258600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:35257000-35260000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:35257200-35258000	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr11:35257200-35258000	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr11:35257200-35258400	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr11:35257200-35258800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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