Variant report

Variant	rs10400349
Chromosome Location	chr11:9028868-9028869
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12574321	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12574447	0.88[ASN][1000 genomes]
rs1432117	0.95[ASN][1000 genomes]
rs1432118	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1984790	0.82[ASN][1000 genomes]
rs2163627	0.95[ASN][1000 genomes]
rs2568022	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2568073	0.84[ASN][1000 genomes]
rs2568084	0.84[ASN][1000 genomes]
rs2653572	0.95[ASN][1000 genomes]
rs2742481	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2742490	0.81[ASN][1000 genomes]
rs2742492	0.88[ASN][1000 genomes]
rs2742506	0.84[ASN][1000 genomes]
rs2742509	0.84[ASN][1000 genomes]
rs4910179	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9026200-9034800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:9026200-9038800	Weak transcription	Right Atrium	heart
3	chr11:9026400-9037400	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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