Variant report

Variant	rs12574447
Chromosome Location	chr11:9050094-9050095
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10400349	0.88[ASN][1000 genomes]
rs1432117	0.84[ASN][1000 genomes]
rs1432118	0.84[ASN][1000 genomes]
rs1883101	0.82[ASN][1000 genomes]
rs2163627	0.84[ASN][1000 genomes]
rs2568022	0.84[ASN][1000 genomes]
rs2653572	0.84[ASN][1000 genomes]
rs2742481	0.84[ASN][1000 genomes]
rs9737147	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9035200-9051800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:9038200-9064000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr11:9039000-9052000	Weak transcription	Spleen	Spleen
4	chr11:9039000-9058800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:9039600-9052000	Weak transcription	Lung	lung
6	chr11:9039600-9057800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:9041800-9052400	Weak transcription	Gastric	stomach
8	chr11:9042400-9050200	Weak transcription	Colonic Mucosa	Colon
9	chr11:9043400-9059200	Weak transcription	Right Atrium	heart
10	chr11:9043800-9051800	Weak transcription	Left Ventricle	heart
11	chr11:9043800-9052400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:9045800-9052000	Weak transcription	Fetal Intestine Small	intestine
13	chr11:9047200-9068600	Weak transcription	Fetal Intestine Large	intestine
14	chr11:9047400-9052200	Weak transcription	Adipose Nuclei	Adipose
15	chr11:9047600-9050200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:9047600-9051000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:9047800-9058400	Weak transcription	HSMMtube	muscle
18	chr11:9049000-9050400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:9049000-9052000	Weak transcription	Pancreas	Pancrea
20	chr11:9049000-9056600	Weak transcription	Fetal Lung	lung
21	chr11:9049200-9050200	Weak transcription	Fetal Stomach	stomach
22	chr11:9049600-9051000	Enhancers	Fetal Muscle Trunk	muscle
23	chr11:9049800-9051000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr11:9049800-9051000	Enhancers	Fetal Muscle Leg	muscle
25	chr11:9049800-9051200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:9050000-9050600	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links