Variant report

Variant	rs1883101
Chromosome Location	chr11:9058975-9058976
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9057967..9060899-chr11:9063796..9066670,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10743099	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs10769986	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042113	0.82[JPT][hapmap]
rs12574447	0.82[ASN][1000 genomes]
rs1432117	1.00[JPT][hapmap]
rs1432118	1.00[JPT][hapmap]
rs1883100	0.98[ASN][1000 genomes]
rs2116513	1.00[JPT][hapmap]
rs2163627	1.00[JPT][hapmap]
rs2568076	1.00[JPT][hapmap]
rs2653572	1.00[JPT][hapmap]
rs2653617	1.00[JPT][hapmap]
rs2742522	1.00[JPT][hapmap]
rs7108116	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs7125458	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9038200-9064000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:9043400-9059200	Weak transcription	Right Atrium	heart
3	chr11:9047200-9068600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:9051400-9059000	Weak transcription	Placenta	Placenta
5	chr11:9052400-9067800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:9052800-9060400	Weak transcription	Lung	lung
7	chr11:9052800-9060600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:9052800-9069800	Weak transcription	Gastric	stomach
9	chr11:9053000-9060600	Weak transcription	Fetal Stomach	stomach
10	chr11:9055200-9060200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:9055600-9059600	Weak transcription	Pancreas	Pancrea
12	chr11:9055600-9060800	Weak transcription	Adipose Nuclei	Adipose
13	chr11:9056000-9060800	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:9057800-9059400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:9057800-9059600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:9057800-9059600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:9057800-9059600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr11:9057800-9060000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:9058200-9059200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr11:9058200-9059200	Enhancers	Brain Angular Gyrus	brain
21	chr11:9058200-9059200	Enhancers	Brain Hippocampus Middle	brain
22	chr11:9058200-9059200	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr11:9058200-9059400	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr11:9058200-9059400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr11:9058200-9059400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:9058200-9059400	Enhancers	Brain Anterior Caudate	brain
27	chr11:9058200-9059400	Enhancers	Brain Cingulate Gyrus	brain
28	chr11:9058200-9059400	Enhancers	Brain Substantia Nigra	brain
29	chr11:9058200-9059600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr11:9058200-9059600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:9058200-9060400	Enhancers	Fetal Lung	lung
32	chr11:9058400-9059200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr11:9058400-9059600	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr11:9058400-9099800	Weak transcription	Aorta	Aorta
35	chr11:9058600-9059200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:9058600-9060600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:9058800-9059200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:9058800-9059400	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr11:9058800-9059400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:9058800-9063000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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